HDF5Topology

class narupatools.frame.hdf5.trajectory.HDF5Topology

Topology read from a HDF5 trajectory.

Inheritance

Methods

__init__	Initialize self.
from_string	Create a HDF5 topology from a JSON string.
get_frame	Create a FrameData representation, with the given fields present if available.

__init__() → None

Initialize self. See help(type(self)) for accurate signature.

classmethod from_string(string: str) → narupatools.frame.hdf5.trajectory.HDF5Topology

Create a HDF5 topology from a JSON string.

get_frame(*, fields: infinite_sets.infinite_sets.InfiniteSet[str]) → narupa.trajectory.frame_data.FrameData

Create a FrameData representation, with the given fields present if available.

Parameters

fields – Collection of fields that should be added to FrameData if available.